Co-expression analysis

Gene ID Contig12389_s_at
Gene name
Homology with ArabidopsisSimilar to At1g77980: AGL66 (AGAMOUS-LIKE 66) (HF=1e-2)
Module size 16 genes
NF 0.29
%ile 37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7489.10.92Contig12389_s_atContig12389--1e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.3747.90.94Contig26233_atContig26233--1e+0At5g56920-O.I.H.G.S.X.
0.3747.90.94Contig9457_atContig9457--2e-3At5g66070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3545.10.95Contig14682_atContig14682--2e+0At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.3342.60.95Contig8893_atContig8893--2e-14At5g61970signal recognition particle-related / SRP-relatedO.I.H.G.S.X.
0.3342.60.94Contig16196_atContig16196--2e-2At4g20470unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig13237_atContig13237--1e-11At3g56430-O.I.H.G.S.X.
0.2835.50.94rbah28f02_s_atrbah28f02--2e+0At3g03010aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.2732.10.93Contig7192_atContig7192--2e-8At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.2630.40.95Contig12105_atContig12105--2e-2At3g52640nicastrin-relatedO.I.H.G.S.X.
0.2326.10.95Contig14290_atContig14290--9e-15At5g57030LUT2 (LUTEIN DEFICIENT 2)O.I.H.G.S.X.
0.2021.10.95EBem10_SQ003_I08_s_atEBem10_SQ003_I08--2e+0At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)O.I.H.G.S.X.
0.2021.10.94Contig16588_atContig16588--2e+0At2g18530protein kinase family proteinO.I.H.G.S.X.
0.1919.60.95Contig25599_atContig25599--4e+0At4g10595LCR2 (Low-molecular-weight cysteine-rich 2)O.I.H.G.S.X.
0.1919.60.95Contig14103_atContig14103--2e-1At4g19040EDR2O.I.H.G.S.X.
0.1514.10.95Contig18385_atContig18385--2e+0Atmg01170-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.399.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
17.299.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
17.199.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.895.7GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.795.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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