Co-expression analysis

Gene ID Contig12388_at
Gene name
Homology with ArabidopsisSimilar to At1g77980: AGL66 (AGAMOUS-LIKE 66) (HF=2e-2)
Module size 6 genes
NF 0.20
%ile 24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4255.20.91Contig12388_atContig12388--2e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.4458.90.91Contig11705_atContig11705--3e-29At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.2326.10.90Contig10126_atContig10126--9e-2At4g30067LCR63 (Low-molecular-weight cysteine-rich 63)O.I.H.G.S.X.
0.1818.20.91Contig12389_s_atContig12389--1e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.1311.60.91Contig13577_atContig13577--2e+0At5g65650unknown proteinO.I.H.G.S.X.
0.086.50.90Contig23681_atContig23681--2e-1At2g18520pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
4.196.2GSM130800control, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
4.196.2GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.695.3GSM71148OWB-R unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.695.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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