Co-expression analysis

Gene ID	Contig1237_s_at
Gene name	aquaporin
Homology with Arabidopsis	Similar to At1g01620: PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) (HF=1e-30)
Module size	31 genes
NF	0.19
%ile	22.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.85	Contig1237_s_at	Contig1237	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.91	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.90	Contig6730_at	Contig6730	-	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.90	Contig10912_at	Contig10912	-	-	2e-1	At4g28200	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.91	Contig12451_at	Contig12451	-	-	1e+0	At1g76560	CP12-3	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig9944_s_at	Contig9944	-	-	4e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig8187_at	Contig8187	-	-	1e-10	At5g65720	NFS1	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.91	Contig12545_at	Contig12545	-	-	1e-3	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.90	Contig13062_at	Contig13062	-	-	5e+0	At3g61920	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	HM08O22r_s_at	HM08O22r	-	-	2e+0	At2g20560	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig11503_at	Contig11503	-	-	2e+0	At4g03030	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig661_at	Contig661	-	-	4e-23	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	HV10J10u_at	HV10J10u	-	-	2e-4	At2g24200	cytosol aminopeptidase	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig5064_at	Contig5064	-	-	1e-3	At2g20490	NOP10	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig12931_at	Contig12931	-	-	5e+0	At4g13575	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	HV_CEa0014J08r2_at	HV_CEa0014J08r2	-	-	4e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig9590_at	Contig9590	-	-	1e-3	At1g53165	ATMAP4K ALPHA1	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig12037_at	Contig12037	-	-	2e-4	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig6622_at	Contig6622	-	-	2e-10	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig11224_at	Contig11224	-	-	1e+1	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	rbah11g06_s_at	rbah11g06	-	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig6308_at	Contig6308	-	-	8e-24	At1g62430	ATCDS1	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig22985_at	Contig22985	-	-	4e-1	At4g30590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig1167_s_at	Contig1167	-	-	5e-9	At3g09480	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig26532_at	Contig26532	-	-	1e-1	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig10859_at	Contig10859	-	-	8e-1	At2g39320	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig8023_at	Contig8023	-	-	8e-50	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig6786_at	Contig6786	-	-	1e+0	At1g25460	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	HW04B18u_s_at	HW04B18u	-	-	8e+0	At5g09560	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig14822_at	Contig14822	-	-	2e+0	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
3.4	94.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.3	90.9	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
2.3	90.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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