Co-expression analysis

Gene ID	Contig12342_at
Gene name
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=7e-6)
Module size	12 genes
NF	0.21
%ile	26.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	68.3	0.81	Contig12342_at	Contig12342	-	-	7e-6	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.85	rbah33e14_s_at	rbah33e14	-	-	4e+0	At5g22580	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig24918_at	Contig24918	-	-	1e+1	At4g29850	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig5166_at	Contig5166	-	-	7e-2	At2g39940	COI1 (CORONATINE INSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.87	Contig6099_at	Contig6099	-	-	6e-35	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.92	Contig26001_at	Contig26001	-	-	4e+0	At1g03710	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.92	Contig9249_at	Contig9249	-	-	1e+0	At3g15110	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.89	HVSMEn0017L11f_at	HVSMEn0017L11f	-	-	1e-7	At1g29920	CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	HS09I04u_at	HS09I04u	-	-	4e+0	At5g35920	CYP79A4P	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.89	Contig17670_at	Contig17670	-	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.90	Contig679_s_at	Contig679	-	-	4e-78	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.89	Contig17044_at	Contig17044	-	-	4e-1	At2g35736	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.6	92.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.6	92.3	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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