Co-expression analysis

Gene ID Contig12336_at
Gene name
Homology with ArabidopsisSimilar to At3g22240: unknown protein (HF=8e-5)
Module size 18 genes
NF 0.74
%ile 93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.83Contig12336_atContig12336--8e-5At3g22240unknown proteinO.I.H.G.S.X.
0.8394.00.86Contig4497_atContig4497--1e-2At1g12410CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)O.I.H.G.S.X.
0.8293.10.89Contig4498_atContig4498--2e-1At1g28290AGP31 (arabinogalactan-protein 31)O.I.H.G.S.X.
0.8293.10.87Contig4499_s_atContig4499--4e-18At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.8192.80.85HT07E22u_x_atHT07E22u--9e-1At4g12850far-red impaired responsive family protein / FAR1 family proteinO.I.H.G.S.X.
0.8092.50.88Contig4495_x_atContig4495--1e+0At5g12235CLE22 (CLAVATA3/ESR-RELATED 22)O.I.H.G.S.X.
0.7991.40.87Contig9656_atContig9656--1e+0At2g41225unknown proteinO.I.H.G.S.X.
0.7790.80.85Contig16284_atContig16284--2e-3At1g36050unknown proteinO.I.H.G.S.X.
0.7689.80.85Contig17872_atContig17872--2e+0At3g24730catalyticO.I.H.G.S.X.
0.7589.50.86Contig17873_atContig17873--4e-1At4g17490ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)O.I.H.G.S.X.
0.7489.10.83Contig15100_atContig15100--3e+0At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7388.70.90Contig4495_atContig4495--1e+0At5g12235CLE22 (CLAVATA3/ESR-RELATED 22)O.I.H.G.S.X.
0.7388.70.91Contig21078_atContig21078--6e-1At1g77765unknown proteinO.I.H.G.S.X.
0.7086.00.84Contig25193_atContig25193--1e+0Atmg00450-O.I.H.G.S.X.
0.6985.50.86HU12N23u_s_atHU12N23u--5e-1At1g45145ATTRX5O.I.H.G.S.X.
0.6380.30.85Contig5436_atContig5436--6e-1At1g44820aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.5369.70.85HVSMEl0023K24r2_atHVSMEl0023K24r2--4e+0At4g09647-O.I.H.G.S.X.
0.5167.50.83Contig19426_atContig19426--2e-1At3g27400pectate lyase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.6GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
14.699.5GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.299.4GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.799.4GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
12.799.4GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
11.399.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
10.499.2GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
9.799.0GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.798.3GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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