Co-expression analysis

Gene ID	Contig12335_at
Gene name
Homology with Arabidopsis	Similar to At2g22120: protein binding / zinc ion binding (HF=5e-20)
Module size	11 genes
NF	0.45
%ile	62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.96	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig7199_at	Contig7199	-	-	3e-2	At5g49840	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	rbaal20l21_s_at	rbaal20l21	-	-	8e-2	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10686_at	Contig10686	-	-	4e-8	At4g24180	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig17229_at	Contig17229	-	-	1e+1	At2g28570	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	Contig154_at	Contig154	-	-	4e-4	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig7661_at	Contig7661	-	-	2e-53	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	Contig8176_at	Contig8176	-	-	8e-32	At1g05350	thiF family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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