CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig12332_at

Gene name
Homology with Arabidopsis Similar to At3g50410: OBP1 (OBF BINDING PROTEIN 1) (HF=4e+0)

Module size 7 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.89 Contig12332_at Contig12332 - - 4e+0 At3g50410 OBP1 (OBF BINDING PROTEIN 1) O.I. H.G. S.X.
0.77 90.8 0.91 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.61 78.7 0.89 Contig807_s_at Contig807 - - 6e-53 At1g55490 CPN60B (CHAPERONIN 60 BETA) O.I. H.G. S.X.
0.48 63.2 0.91 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.36 47.1 0.94 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.28 35.5 0.92 Contig8505_s_at Contig8505 - - 2e+0 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.27 32.1 0.93 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	90.8	0.89	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.77	90.8	0.91	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.
0.61	78.7	0.89	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.
0.48	63.2	0.91	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.
0.28	35.5	0.92	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.
0.27	32.1	0.93	Contig13428_at	Contig13428	-	-	6e-5	At3g17160	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.56	74.3	0.88	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.55	72.0	0.90	Contig14804_s_at	Contig14804	-	-	2e-11	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	O.I.	H.G.	S.X.
0.53	69.7	0.84	Contig25355_at	Contig25355	-	-	4e-17	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.
0.50	66.9	0.83	HVSMEg0001I20f_at	HVSMEg0001I20f	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.
0.50	66.9	0.86	HT05M20u_at	HT05M20u	-	-	3e-1	At2g28315	-	O.I.	H.G.	S.X.
0.50	66.9	0.88	Contig4797_at	Contig4797	-	-	2e+0	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.
0.50	66.9	0.89	HB22L02r_at	HB22L02r	-	-	1e+0	At1g44770	unknown protein	O.I.	H.G.	S.X.
0.48	63.2	0.81	Contig3303_at	Contig3303	-	-	1e+0	At2g14000	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.83	HD12K21r_at	HD12K21r	-	-	1e+1	Atmg01030	-	O.I.	H.G.	S.X.
0.44	58.9	0.92	Contig21865_at	Contig21865	-	-	9e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.43	56.4	0.81	Contig22469_at	Contig22469	-	-	2e+0	At3g49070	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.80	Contig2859_s_at	Contig2859	-	-	3e-11	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.
0.40	53.1	0.83	Contig14337_at	Contig14337	-	-	4e-8	At5g12870	MYB46 (MYB DOMAIN PROTEIN 46)	O.I.	H.G.	S.X.
0.40	53.1	0.89	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.
0.36	47.1	0.83	Contig4156_s_at	Contig4156	-	-	2e-39	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.
0.36	47.1	0.87	Contig10098_s_at	Contig10098	-	-	5e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.90	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.34	43.6	0.86	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.83	rbah11m03_s_at	rbah11m03	-	-	3e-1	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	O.I.	H.G.	S.X.
0.31	38.6	0.91	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	O.I.	H.G.	S.X.
0.30	37.0	0.86	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.
0.29	35.5	0.77	Contig11763_s_at	Contig11763	-	-	7e-2	At4g09270	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.84	Contig18530_s_at	Contig18530	-	-	5e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.84	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.
0.29	35.5	0.86	HVSMEa0003J04r2_s_at	HVSMEa0003J04r2	-	-	1e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.
0.28	35.5	0.87	HVSMEg0004J24r2_at	HVSMEg0004J24r2	-	-	4e+0	Atmg01000	-	O.I.	H.G.	S.X.
0.27	32.1	0.86	HU05H13u_s_at	HU05H13u	-	-	5e-1	At1g55675	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.87	Contig11481_at	Contig11481	-	-	1e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.
0.26	30.4	0.87	Contig17187_at	Contig17187	-	-	2e+0	At5g26730	-	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig16406_at	Contig16406	-	-	3e-2	At3g15030	TCP4 (TCP family transcription factor 4)	O.I.	H.G.	S.X.
0.25	28.9	0.93	Contig12506_at	Contig12506	-	-	2e+0	At4g31740	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.6 98.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.1 96.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
2.7 92.7 GSM373008 genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7 92.7 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.2	99.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig12332_at
Gene name
Homology with Arabidopsis	Similar to At3g50410: OBP1 (OBF BINDING PROTEIN 1) (HF=4e+0)
Module size	7 genes
NF	0.50
%ile	70.1

Co-expression analysis

Gene ID Contig12332_at Gene name Homology with ArabidopsisSimilar to At3g50410: OBP1 (OBF BINDING PROTEIN 1) (HF=4e+0) Module size 7 genes NF 0.50 %ile 70.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig12332_at

Gene name
Homology with Arabidopsis Similar to At3g50410: OBP1 (OBF BINDING PROTEIN 1) (HF=4e+0)

Module size 7 genes

NF 0.50

%ile 70.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays