CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig12332_at

Gene name
Homology with Arabidopsis Similar to At3g50410: OBP1 (OBF BINDING PROTEIN 1) (HF=4e+0)

Module size 7 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.89 Contig12332_at Contig12332 - - 4e+0 At3g50410 OBP1 (OBF BINDING PROTEIN 1) O.I. H.G. S.X.
0.77 90.8 0.91 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein O.I. H.G. S.X.
0.61 78.7 0.89 Contig807_s_at Contig807 - - 6e-53 At1g55490 CPN60B (CHAPERONIN 60 BETA) O.I. H.G. S.X.
0.48 63.2 0.91 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.36 47.1 0.94 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.28 35.5 0.92 Contig8505_s_at Contig8505 - - 2e+0 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) O.I. H.G. S.X.
0.27 32.1 0.93 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.6 98.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.1 96.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
2.7 92.7 GSM373008 genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7 92.7 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress

Inter-species module comparison

A co-expression module including the maize gene, Zm.4339.1.A1_at, orthologous to the query gene, Contig12332_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 48.5 Zm.4339.1.A1_at At3g50410 - - 1e+0 At1g47410 unknown protein O.I. H.G. S.X.
0.59 76.1 Zm.17687.1.S1_at At3g50410 - - 2e-1 At1g30972 - O.I. H.G. S.X.
0.53 69.1 Zm.10826.1.S1_at At3g50410 hypothetical protein LOC100274249 - 8e-9 At2g41190 amino acid transporter family protein O.I. H.G. S.X.
0.50 65.7 Zm.6604.1.A1_at At3g50410 hypothetical protein LOC100280387 - 5e+0 At3g18160 peroxin-3 family protein O.I. H.G. S.X.
0.46 58.4 Zm.5290.2.S1_at At3g50410 - - 5e+0 At5g09240 transcriptional coactivator p15 (PC4) family protein O.I. H.G. S.X.
0.33 36.0 Zm.13409.1.S1_at At3g50410 3-oxoacyl-synthase III - 6e-2 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) O.I. H.G. S.X.
0.33 36.0 Zm.7276.1.S1_at At3g50410 FLU - 1e-2 At3g14110 FLU (FLUORESCENT IN BLUE LIGHT) O.I. H.G. S.X.
0.32 33.4 Zm.236.1.S1_at At3g50410 SBP-domain protein2 - 1e-2 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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