Co-expression analysis

Gene ID	Contig12297_at
Gene name
Homology with Arabidopsis	Similar to At3g13190: myosin heavy chain-related (HF=1e+0)
Module size	13 genes
NF	0.53
%ile	73.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.87	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.88	Contig7382_s_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.87	Contig7382_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.87	Contig14714_at	Contig14714	P-type ATPase	-	3e-68	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.89	Contig12125_at	Contig12125	-	-	6e+0	At3g07522	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	Contig16755_at	Contig16755	-	-	6e+0	At4g33100	-	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.87	HVSMEb0005M08r2_at	HVSMEb0005M08r2	-	-	3e-28	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.87	Contig11329_at	Contig11329	-	-	8e-3	At5g44570	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.88	Contig6625_at	Contig6625	-	-	5e-30	At5g13030	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.87	Contig4958_at	Contig4958	-	-	2e+0	At1g51560	FMN binding	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.87	Contig11402_s_at	Contig11402	-	-	1e+1	At3g02240	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.91	HA14H02r_at	HA14H02r	-	-	8e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.85	Contig5059_s_at	Contig5059	RNase S-like protein	-	7e+0	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7	99.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8	98.9	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.5	98.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.8	98.3	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage