Co-expression analysis

Gene ID	Contig12263_at
Gene name
Homology with Arabidopsis	Similar to At3g26570: PHT2 (HF=2e-16)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.95	Contig12263_at	Contig12263	-	-	2e-16	At3g26570	PHT2	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig5680_at	Contig5680	-	-	1e-1	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig9885_at	Contig9885	-	-	9e-1	At5g28590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig10584_at	Contig10584	-	-	6e-1	At3g09830	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig9093_at	Contig9093	-	-	8e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	HVSMEn0022P11f_s_at	HVSMEn0022P11f	-	-	4e+0	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.8	98.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.0	98.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.4	98.5	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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