Co-expression analysis

Gene ID	Contig12262_at
Gene name
Homology with Arabidopsis	Similar to At5g23405: high mobility group (HMG1/2) family protein (HF=2e-1)
Module size	6 genes
NF	0.56
%ile	78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.96	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig19041_at	Contig19041	-	-	5e+0	At4g22850	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.8	99.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.4	99.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the grape gene, 1606823_at, orthologous to the query gene, Contig12262_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1606823_at	At5g23405	-	-	4e-1	At1g48980	oxidoreductase	O.I.	H.G.	S.X.	Please select
0.46	66.5	1617238_at	At5g23405	hypothetical protein LOC100258246	-	3e-27	At1g63430	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611391_at	At5g23405	hypothetical protein LOC100256320	-	1e-15	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1622512_at	At5g23405	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621139_at	At5g23405	hypothetical protein LOC100262947	-	3e-9	At5g08390	-	O.I.	H.G.	S.X.	Please select
0.38	53.6	1622709_s_at	At5g23405	hypothetical protein LOC100263191	-	9e-57	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.30	39.4	1619148_at	At5g23405	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1620765_at	At5g23405	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1621862_at	At5g23405	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1618544_at	At5g23405	similar to pumilio domain-containing protein PPD1	-	4e-20	At4g25880	APUM6 (Arabidopsis Pumilio 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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