CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig12262_at

Gene name
Homology with Arabidopsis Similar to At5g23405: high mobility group (HMG1/2) family protein (HF=2e-1)

Module size 6 genes

NF 0.56

%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 0.96 Contig12262_at Contig12262 - - 2e-1 At5g23405 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.67 84.7 0.96 Contig1206_s_at Contig1206 - - 0 At5g56000 heat shock protein 81-4 (HSP81-4) O.I. H.G. S.X.
0.67 84.7 0.97 Contig5409_at Contig5409 - - 3e-18 At3g02580 STE1 (STEROL 1) O.I. H.G. S.X.
0.50 66.9 0.97 Contig7155_at Contig7155 - - 3e-1 At1g65520 ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1) O.I. H.G. S.X.
0.38 49.5 0.96 Contig19041_at Contig19041 - - 5e+0 At4g22850 - O.I. H.G. S.X.
0.33 42.6 0.97 Contig2046_at Contig2046 - - 5e+0 At1g60815 RALFL7 (RALF-LIKE 7) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.8 99.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
23.4 99.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.4 99.0 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8 98.9 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5 98.2 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4 98.1 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.5 97.6 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8 95.7 GSM146364 Maythorpe Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8 95.7 GSM146357 Golden Promise Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.221177.1.S1_at, orthologous to the query gene, Contig12262_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.221177.1.S1_at At5g23405 hypothetical protein - 7e-1 At2g23210 UDP-glycosyltransferase/ transferase, transferring glycosyl groups O.I. H.G. S.X.
0.44 71.9 PtpAffx.223079.1.S1_at At5g23405 hypothetical protein - 1e+0 At1g06090 fatty acid desaturase family protein O.I. H.G. S.X.
0.40 67.0 PtpAffx.222617.1.S1_at At5g23405 hypothetical protein - 2e+0 At3g26740 CCL (CCR-LIKE) O.I. H.G. S.X.
0.31 53.7 PtpAffx.216740.1.S1_at At5g23405 hypothetical protein - 2e+1 At4g15563 unknown protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.222889.1.S1_at At5g23405 hypothetical protein - 3e-9 At4g27290 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.02 3.6 PtpAffx.201826.1.S1_at At5g23405 hypothetical protein - 2e-14 At1g21440 mutase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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