Co-expression analysis

Gene ID	Contig12244_at
Gene name
Homology with Arabidopsis	Similar to At1g12663: - (HF=5e-1)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.96	Contig12244_at	Contig12244	-	-	5e-1	At1g12663	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig10332_at	Contig10332	-	-	1e-11	At1g69390	ATMINE1 (Arabidopsis homologue of bacterial MinE 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig17026_at	Contig17026	-	-	1e+0	At1g01770	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig11109_at	Contig11109	-	-	1e-10	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig11073_at	Contig11073	-	-	2e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig17874_at	Contig17874	-	-	4e+0	At1g44010	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.2	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.1	98.9	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.7	98.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.2	97.4	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage