Co-expression analysis

Gene ID	Contig1223_at
Gene name	aquaporin
Homology with Arabidopsis	Similar to At2g37170: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) (HF=6e-38)
Module size	6 genes
NF	0.46
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.96	Contig1223_at	Contig1223	aquaporin	-	6e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig11498_at	Contig11498	-	-	2e+0	At5g07225	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig8846_at	Contig8846	-	-	1e-8	At5g06130	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig7040_at	Contig7040	-	-	6e-8	At3g54670	TTN8 (TITAN8)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage