Co-expression analysis

Gene ID	Contig12195_at
Gene name
Homology with Arabidopsis	Similar to At1g67910: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.33
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig12195_at	Contig12195	-	-	3e+0	At1g67910	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	HV_CEb0017I15r2_at	HV_CEb0017I15r2	-	-	8e-1	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig15176_at	Contig15176	-	-	2e+0	At3g47790	ATATH7	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig19174_at	Contig19174	-	-	4e-1	At2g26970	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig10514_at	Contig10514	-	-	1e-2	At5g67360	ARA12	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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