Co-expression analysis

Gene ID	Contig12110_s_at
Gene name
Homology with Arabidopsis	Similar to At1g12080: unknown protein (HF=3e-1)
Module size	7 genes
NF	0.34
%ile	45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig12110_s_at	Contig12110	-	-	3e-1	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig1445_at	Contig1445	-	-	5e-3	At3g49390	CID10	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig17036_at	Contig17036	-	-	4e-7	At3g27720	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig16128_at	Contig16128	-	-	7e-15	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	95.5	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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