Co-expression analysis

Gene ID Contig12110_s_at
Gene name
Homology with ArabidopsisSimilar to At1g12080: unknown protein (HF=3e-1)
Module size 7 genes
NF 0.34
%ile 45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig12110_s_atContig12110--3e-1At1g12080unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig1445_atContig1445--5e-3At3g49390CID10O.I.H.G.S.X.
0.3545.10.95Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.3545.10.96Contig8742_atContig8742--1e-6At3g61600ATPOB1O.I.H.G.S.X.
0.2935.50.96Contig7886_atContig7886--8e+0At5g397905'-AMP-activated protein kinase beta-1 subunit-relatedO.I.H.G.S.X.
0.2326.10.96Contig16128_atContig16128--7e-15At5g23880CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)O.I.H.G.S.X.
0.1615.30.95Contig5161_s_atContig5161--9e-3At1g54860unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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