Co-expression analysis

Gene ID Contig1210_at
Gene name
Homology with ArabidopsisSimilar to At5g53120: SPDS3 (SPERMIDINE SYNTHASE 3) (HF=2e-16)
Module size 13 genes
NF 0.13
%ile 16.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.80.93Contig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.3240.30.94Contig6590_atContig6590--8e-3At1g21410SKP2AO.I.H.G.S.X.
0.1919.60.94Contig5466_atContig5466--3e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.1919.60.96HU02E04u_s_atHU02E04u--8e-5At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.1716.90.95Contig10812_atContig10812--2e+0At1g54410dehydrin family proteinO.I.H.G.S.X.
0.1514.10.94Contig8595_atContig8595--2e-13At3g14930HEME1O.I.H.G.S.X.
0.1514.10.95Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.1514.10.96Contig10043_atContig10043--8e-38At5g13280AK-LYS1 (ASPARTATE KINASE 1)O.I.H.G.S.X.
0.1210.40.94Contig11511_atContig11511--8e-3At5g46030unknown proteinO.I.H.G.S.X.
0.108.40.94Contig9110_atContig9110--2e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.086.50.94Contig12110_s_atContig12110--3e-1At1g12080unknown proteinO.I.H.G.S.X.
0.086.50.94Contig4933_atContig4933--7e-1At4g33145unknown proteinO.I.H.G.S.X.
0.075.80.94Contig6247_atContig6247--1e-42At1g07570APK1AO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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