Co-expression analysis

Gene ID	Contig12098_at
Gene name
Homology with Arabidopsis	Similar to At1g16210: unknown protein (HF=2e-6)
Module size	12 genes
NF	0.57
%ile	78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	70.3	0.94	Contig12098_at	Contig12098	-	-	2e-6	At1g16210	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.96	Contig16514_at	Contig16514	-	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig9132_at	Contig9132	-	-	9e-2	At1g71750	phosphoribosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.95	Contig5736_at	Contig5736	-	-	7e-30	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	Contig6820_at	Contig6820	-	-	7e-12	At4g13350	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.95	HVSMEk0006G12r2_s_at	HVSMEk0006G12r2	-	-	7e-1	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	HVSMEa0003B04r2_s_at	HVSMEa0003B04r2	-	-	3e+0	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig10269_at	Contig10269	-	-	7e-13	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig2155_at	Contig2155	-	-	3e-9	At2g20890	PSB29	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig7649_at	Contig7649	-	-	2e+0	At1g52342	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.5	95.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.9	93.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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