Co-expression analysis

Gene ID Contig12085_at
Gene name
Homology with ArabidopsisSimilar to At5g63260: zinc finger (CCCH-type) family protein (HF=1e-2)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.6077.30.93Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5774.90.93HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.5572.00.93Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4661.00.93Contig20962_atContig20962--9e-9At2g33820MBAC1O.I.H.G.S.X.
0.3849.50.94Contig19683_atContig19683--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.099.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.099.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.799.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.299.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.997.9GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.149742.1.A1_at, orthologous to the query gene, Contig12085_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5279.4PtpAffx.149742.1.A1_atAt5g63260hypothetical protein-1e+0At1g04990zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.6388.1PtpAffx.205143.1.S1_atAt5g63260hypothetical protein-6e-2At5g41260protein kinase family proteinO.I.H.G.S.X.
0.5582.2PtpAffx.208519.1.S1_atAt5g63260hypothetical protein-0At5g19010MPK16O.I.H.G.S.X.
0.4774.6PtpAffx.388.3.S1_s_atAt5g63260hypothetical protein-5e-29At5g55120VTC5 (VITAMIN C DEFECTIVE 5)O.I.H.G.S.X.
0.4673.7PtpAffx.35473.1.S1_a_atAt5g63260hypothetical protein-3e-1At3g23280zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinO.I.H.G.S.X.
0.4369.7PtpAffx.69905.1.A1_atAt5g63260hypothetical protein-4e-27At4g12790ATP-binding family proteinO.I.H.G.S.X.
0.4369.7PtpAffx.101059.1.A1_atAt5g63260hypothetical protein-2e+0At4g274903' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.4067.0PtpAffx.89237.1.A1_atAt5g63260hypothetical protein-3e-11At1g21710OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)O.I.H.G.S.X.
0.2850.5PtpAffx.201757.1.S1_atAt5g63260hypothetical protein-1e+0At1g08270-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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