Co-expression analysis

Gene ID Contig12085_at
Gene name
Homology with ArabidopsisSimilar to At5g63260: zinc finger (CCCH-type) family protein (HF=1e-2)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.6077.30.93Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5774.90.93HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.5572.00.93Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4661.00.93Contig20962_atContig20962--9e-9At2g33820MBAC1O.I.H.G.S.X.
0.3849.50.94Contig19683_atContig19683--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.099.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.099.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.799.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.299.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.997.9GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0278800, orthologous to the query gene, Contig12085_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.8Os12g0278800At5g63260-U2 auxiliary factor small subunit family protein1e-3At5g46780VQ motif-containing proteinO.I.H.G.S.X.
0.3745.0Os02g0594100At5g63260-Protein kinase ATN15e-33At5g50180protein kinase, putativeO.I.H.G.S.X.
0.3338.8Os05g0162200At5g63260-Conserved hypothetical protein8e-2At5g13560unknown proteinO.I.H.G.S.X.
0.3134.5Os02g0832500At5g63260-Glycosyl transferase, family 48 protein3e-66At5g13000ATGSL12 (glucan synthase-like 12)O.I.H.G.S.X.
0.3134.5Os07g0274800At5g63260-B' regulatory subunit of PP2A2e-8At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.3032.7Os01g0879400At5g63260--2e-14At3g49880glycosyl hydrolase family protein 43O.I.H.G.S.X.
0.2831.1Os02g0162600At5g63260-Conserved hypothetical protein2e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2524.1Os10g0563200At5g63260-ARM repeat fold domain containing protein1e-12At2g44900armadillo/beta-catenin repeat family protein / F-box family proteinO.I.H.G.S.X.
0.2524.1Os07g0669800At5g63260-Hypothetical protein8e+0At5g36080unknown proteinO.I.H.G.S.X.
0.2422.4Os07g0648300At5g63260-Conserved hypothetical protein1e-3At4g00450CRP (CRYPTIC PRECOCIOUS)O.I.H.G.S.X.
0.2422.4Os10g0400900At5g63260-Colon cancer-associated Mic1-like domaincontaining protein6e-3At3g12010-O.I.H.G.S.X.
0.2321.2Os02g0735700At5g63260-Ankyrin repeat containing protein6e-5At2g01680ankyrin repeat family proteinO.I.H.G.S.X.
0.2321.2Os03g0681300At5g63260-SABRE4e-1At1g21520unknown proteinO.I.H.G.S.X.
0.2219.4Os05g0508700At5g63260-TRAF-like domain containing protein6e-15At5g43560meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.2219.4Os04g0541500At5g63260-Diacylglycerol kinase, catalytic region domaincontaining protein7e-6At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.2117.9Os03g0165600At5g63260-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein3e-1At3g47890ubiquitin thiolesterase/ zinc ion bindingO.I.H.G.S.X.
0.2117.9Os06g0102300At5g63260-Phytochelatin synthase1e-3At1g03980ATPCS2 (phytochelatin synthase 2)O.I.H.G.S.X.
0.2117.9Os10g0495000At5g63260-KH, type 1 domain containing protein2e-2At5g15270KH domain-containing proteinO.I.H.G.S.X.
0.2016.5Os06g0105900At5g63260-Conserved hypothetical protein1e-4At4g01290unknown proteinO.I.H.G.S.X.
0.2016.5Os02g0480900At5g63260-Ataxin-2, N-terminal domain containing protein2e+0At2g33200F-box family proteinO.I.H.G.S.X.
0.1915.1Os05g0499500At5g63260-TraB determinant family protein2e+0At1g05270TraB family proteinO.I.H.G.S.X.
0.1915.1Os04g0395600At5g63260-Cyclin-like F-box domain containing protein3e-8At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)O.I.H.G.S.X.
0.1915.1Os02g0702500At5g63260-Protein kinase domain containing protein1e-16At5g35980protein kinase family proteinO.I.H.G.S.X.
0.1813.7Os03g0698800At5g63260-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein3e-17At2g41900zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.1712.6Os03g0794800At5g63260-XRN32e-25At1g54490XRN4 (EXORIBONUCLEASE 4)O.I.H.G.S.X.
0.1712.6Os06g0558700At5g63260-Poly(A) polymerase, RNA-binding region domaincontaining protein6e-8At2g25850nucleotidyltransferase family proteinO.I.H.G.S.X.
0.1611.3Os01g0862300At5g63260-Sorting nexin 12e-20At5g06140SNX1 (SORTING NEXIN 1)O.I.H.G.S.X.
0.1611.3Os05g0506300At5g63260-Conserved hypothetical protein4e-2At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1510.3Os03g0265300At5g63260-Mitochondrial substrate carrier family protein2e-1At2g39970peroxisomal membrane protein (PMP36)O.I.H.G.S.X.
0.149.3Os01g0614700At5g63260-Conserved hypothetical protein5e-20At3g58600-O.I.H.G.S.X.
0.149.3Os08g0412600At5g63260-RabGAP/TBC domain containing protein2e-73At3g02460plant adhesion molecule, putativeO.I.H.G.S.X.
0.149.3Os02g0452500At5g63260-SNARE-interacting protein KEULE2e-9At1g12360KEU (keule)O.I.H.G.S.X.
0.149.3Os08g0564800At5g63260-Conserved hypothetical protein6e-10At1g15780unknown proteinO.I.H.G.S.X.
0.138.2Os04g0382200At5g63260-Exo70 exocyst complex subunit family protein2e-2At1g62240unknown proteinO.I.H.G.S.X.
0.138.2Os04g0653200At5g63260-Low affinity calcium transporter CAX2 (Fragment)1e-6At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.127.2Os05g0515700At5g63260-Conserved hypothetical protein2e-14At1g28520VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)O.I.H.G.S.X.
0.116.5Os01g0253100At5g63260-Pto kinase interactor 16e-12At4g02010protein kinase family proteinO.I.H.G.S.X.
0.116.5Os08g0528900At5g63260-Transcriptional activator FHA14e-18At3g07260forkhead-associated domain-containing protein / FHA domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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