Co-expression analysis

Gene ID	Contig12085_at
Gene name
Homology with Arabidopsis	Similar to At5g63260: zinc finger (CCCH-type) family protein (HF=1e-2)
Module size	6 genes
NF	0.55
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.93	Contig12085_at	Contig12085	-	-	1e-2	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	Contig9075_s_at	Contig9075	-	-	1e-1	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.93	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig13704_at	Contig13704	-	-	2e+0	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig20962_at	Contig20962	-	-	9e-9	At2g33820	MBAC1	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig19683_at	Contig19683	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.0	99.3	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.88815.1.A1_s_at, orthologous to the query gene, Contig12085_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	GmaAffx.88815.1.A1_s_at	At5g63260	methionine synthase	-	2e-113	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please select
0.83	92.5	GmaAffx.89562.1.A1_at	At5g63260	-	-	2e-24	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.83	92.5	Gma.1079.1.S1_s_at	At5g63260	-	-	0	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.80	91.5	GmaAffx.90963.1.S1_s_at	At5g63260	-	-	6e-43	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.73	88.9	GmaAffx.90963.1.S1_x_at	At5g63260	-	-	6e-43	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.16930.1.S1_at	At5g63260	-	-	1e-18	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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