Co-expression analysis

Gene ID Contig12085_at
Gene name
Homology with ArabidopsisSimilar to At5g63260: zinc finger (CCCH-type) family protein (HF=1e-2)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.6077.30.93Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5774.90.93HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.5572.00.93Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4661.00.93Contig20962_atContig20962--9e-9At2g33820MBAC1O.I.H.G.S.X.
0.3849.50.94Contig19683_atContig19683--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.099.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.099.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.799.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.299.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.997.9GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g63260, orthologous to the query gene, Contig12085_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8693.1At5g63260836446zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFOO.I.H.G.S.X.
0.3745.0At5g08450830744-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.3439.8At3g10730820242sad1/unc-84-like 2 family proteinF:molecular_function unknown;P:biological_process unknown;C:nuclear envelope, endoplasmic reticulum, spindle, phragmoplast;MOBPFAO.I.H.G.S.X.
0.2930.3At1g21610838762wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.2726.2At3g10550820220phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2522.6At2g47350819348PAPA-1-like family protein / zinc finger (HIT type) family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2319.3At2g36960818270TKI1 (TSL-kinase interacting protein 1)Arabidopsis thaliana myb/SANT domain proteinO.I.H.G.S.X.
0.2217.5At3g12640820444RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFBOVO.I.H.G.S.X.
0.2014.4At3g51640824327unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.2014.4At2g36480818222zinc finger (C2H2-type) family proteinF:zinc ion binding;P:biological_process unknown;C:intracellular;OMFBPO.I.H.G.S.X.
0.1912.7At5g06830830574unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPABFO.I.H.G.S.X.
0.1912.7At3g09850820143D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MBOFPAVO.I.H.G.S.X.
0.1710.2At4g10070826598KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVAO.I.H.G.S.X.
0.1710.2At2g32760817836unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.168.8At4g17895827513UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.168.8At3g45100823646SETH2encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.O.I.H.G.S.X.
0.157.8At3g07790819970DGCR14-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPVO.I.H.G.S.X.
0.157.8At3g45830823726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.146.8At5g41580834160zinc ion bindingF:zinc ion binding;P:unknown;C:unknown;MOFPBVAO.I.H.G.S.X.
0.146.8At5g55390835632EDM2Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.O.I.H.G.S.X.
0.146.8At4g14920827150DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.H.G.S.X.
0.124.9At1g30300839910unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPAFO.I.H.G.S.X.
0.124.9At1g69220843253SIK1Encodes a putative serine/threonine kinase (SIK1).O.I.H.G.S.X.
0.114.1At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.O.I.H.G.S.X.
0.114.1At5g01390831415DNAJ heat shock protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.H.G.S.X.
0.114.1At5g42470834254-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.103.4At5g10270830891CDKCEncodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.O.I.H.G.S.X.
0.103.4At3g53340824502NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:intracellular, nucleus;MPFOO.I.H.G.S.X.
0.092.8At5g42560834262abscisic acid-responsive HVA22 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.H.G.S.X.
0.082.3At2g42700818870-F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.071.9At5g27710832833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage