Co-expression analysis

Gene ID	Contig12065_at
Gene name
Homology with Arabidopsis	Similar to At5g61670: - (HF=1e+0)
Module size	6 genes
NF	0.58
%ile	80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig7149_at	Contig7149	-	-	7e-1	At1g04690	KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
6.7	98.3	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
5.3	97.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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