Co-expression analysis

Gene ID	Contig12037_at
Gene name
Homology with Arabidopsis	Similar to At5g22300: NIT4 (NITRILASE 4) (HF=2e-4)
Module size	6 genes
NF	0.23
%ile	29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.94	Contig12037_at	Contig12037	-	-	2e-4	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	HS07H05u_s_at	HS07H05u	-	-	1e-6	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	rbah11g06_s_at	rbah11g06	-	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig13294_at	Contig13294	-	-	6e+0	At5g28463	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig1167_s_at	Contig1167	-	-	5e-9	At3g09480	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.1	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.9	98.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM372974	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.0	98.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1622423_at, orthologous to the query gene, Contig12037_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622423_at	At5g22300	similar to Bifunctional nitrilase/nitrile hydratase NIT4B	-	1e-13	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1614373_at	At5g22300	hypothetical protein LOC100249178	-	2e-5	At2g25605	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1617949_at	At5g22300	hypothetical protein LOC100241470	-	1e-3	At3g09735	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1615857_s_at	At5g22300	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614796_at	At5g22300	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	1615820_at	At5g22300	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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