Co-expression analysis

Gene ID Contig12037_at
Gene name
Homology with ArabidopsisSimilar to At5g22300: NIT4 (NITRILASE 4) (HF=2e-4)
Module size 6 genes
NF 0.23
%ile 29.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.94Contig12037_atContig12037--2e-4At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.4661.00.95HS07H05u_s_atHS07H05u--1e-6At2g29080ftsh3 (FtsH protease 3)O.I.H.G.S.X.
0.3037.00.94rbah11g06_s_atrbah11g06--1e+0At3g21860ASK10 (ARABIDOPSIS SKP1-LIKE 10)O.I.H.G.S.X.
0.2528.90.95Contig13294_atContig13294--6e+0At5g28463unknown proteinO.I.H.G.S.X.
0.1919.60.94Contig1167_s_atContig1167--5e-9At3g09480histone H2B, putativeO.I.H.G.S.X.
0.075.80.95HS17M12u_s_atHS17M12u--4e+0At3g23250MYB15 (MYB DOMAIN PROTEIN 15)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.799.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
14.199.5GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
8.998.9GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
7.198.4GSM372974genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
7.098.4GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
6.898.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM372997genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.797.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6113.1.S1_a_at, orthologous to the query gene, Contig12037_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.0Ta.6113.1.S1_a_atAt5g22300--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.8393.4Ta.6113.1.S1_atAt5g22300--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.8092.2Ta.6113.2.S1_x_atAt5g22300--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6786.3Ta.6101.1.S1_atAt5g22300--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.6081.0Ta.3922.1.S1_atAt5g22300--3e-6At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.3142.7Ta.24202.1.S1_s_atAt5g22300--7e+0At4g33640unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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