Co-expression analysis

Gene ID	Contig11971_at
Gene name
Homology with Arabidopsis	Similar to At5g47640: NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) (HF=7e-25)
Module size	6 genes
NF	0.54
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.87	Contig11971_at	Contig11971	-	-	7e-25	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.90	HW09M17u_at	HW09M17u	-	-	4e+0	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	Contig10262_at	Contig10262	-	-	5e+0	At4g32090	galactosyltransferase	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.90	Contig4199_at	Contig4199	-	-	2e-14	At1g72280	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	Contig22118_at	Contig22118	-	-	1e-12	At3g10390	FLD (FLOWERING LOCUS D)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.91	Contig6515_at	Contig6515	-	-	6e-4	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.2	99.0	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.4	98.8	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.6	98.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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