Co-expression analysis

Gene ID Contig11957_at
Gene name
Homology with ArabidopsisSimilar to At3g48280: CYP71A25 (HF=5e-2)
Module size 8 genes
NF 0.68
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.92Contig11957_atContig11957--5e-2At3g48280CYP71A25O.I.H.G.S.X.
0.8694.80.92Contig8468_atContig8468--1e-12At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.7891.20.92HR01A09u_atHR01A09u--2e+0At5g55000FIP2O.I.H.G.S.X.
0.7891.20.92Contig11154_atContig11154--1e-15At5g66210CPK28O.I.H.G.S.X.
0.6784.70.92Contig6325_atContig6325--4e-1At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.6380.30.93Contig12027_atContig12027ORG4-2e-3At2g06010ORG4 (OBP3-RESPONSIVE GENE 4)O.I.H.G.S.X.
0.5572.00.94HY02G07u_atHY02G07u--4e+0At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.4458.90.92Contig24268_atContig24268--2e+0At5g57345unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.86rbaal12n12_s_atrbaal12n12--1e-3At5g65980auxin efflux carrier family proteinO.I.H.G.S.X.
0.6480.90.85Contig11573_atContig11573--2e-63At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.6380.30.88Contig16912_atContig16912--6e-11At4g274903' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.5975.80.90Contig9371_atContig9371--8e+0At3g09590pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5674.30.88Contig7779_atContig7779--1e-13At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.
0.5674.30.90Contig26379_atContig26379--1e+0At5g41570WRKY24O.I.H.G.S.X.
0.5066.90.89HVSMEi0002L12r2_atHVSMEi0002L12r2--1e+0At3g56400WRKY70O.I.H.G.S.X.
0.5066.90.91EBro01_SQ004_M15_atEBro01_SQ004_M15--1e+0At3g01530AtMYB57 (myb domain protein 57)O.I.H.G.S.X.
0.5066.90.91Contig75_x_atContig75--8e-45At1g09200histone H3O.I.H.G.S.X.
0.4762.20.92Contig5017_s_atContig5017--2e-48At3g62220serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.4661.00.90Contig3058_atContig3058--2e-4At1g22990heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.4661.00.93HT11C12u_s_atHT11C12u--3e+0At5g26840unknown proteinO.I.H.G.S.X.
0.4661.00.87Contig24244_atContig24244--3e-1At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.
0.4458.90.87Contig11203_atContig11203--2e+0At1g04960-O.I.H.G.S.X.
0.4458.90.88Contig20245_atContig20245--3e-14At3g16785PLDP1 (PHOSPHOLIPASE D P1)O.I.H.G.S.X.
0.4255.20.90HV10A20u_s_atHV10A20u--3e+0At3g25233unknown proteinO.I.H.G.S.X.
0.4255.20.90Contig20255_atContig20255--2e-1At5g03350legume lectin family proteinO.I.H.G.S.X.
0.4053.10.91Contig223_s_atContig223--8e-1At5g56900CwfJ-like family protein / zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.4053.10.93Contig4494_x_atContig4494--5e+0At5g55508unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig2636_s_atContig2636--7e-7At1g120101-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeO.I.H.G.S.X.
0.3950.50.91Contig12247_atContig12247--3e-1At3g04640glycine-rich proteinO.I.H.G.S.X.
0.3849.50.86Contig17030_atContig17030--2e+0At1g23074unknown proteinO.I.H.G.S.X.
0.3849.50.86Contig23023_atContig23023--7e-2At4g35590RWP-RK domain-containing proteinO.I.H.G.S.X.
0.3849.50.91Contig11653_s_atContig11653--8e+0At4g40011unknown proteinO.I.H.G.S.X.
0.3849.50.90HS08J14u_x_atHS08J14u--4e+0At4g16265NRPB9BO.I.H.G.S.X.
0.3849.50.92Contig9113_s_atContig9113--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.3647.10.85Contig9865_atContig9865--5e-10At5g13190-O.I.H.G.S.X.
0.3647.10.88EBro02_SQ002_C17_s_atEBro02_SQ002_C17--5e-2At3g28857transcription regulatorO.I.H.G.S.X.
0.3647.10.92Contig23705_atContig23705--3e-14At3g54140PTR1 (PEPTIDE TRANSPORTER 1)O.I.H.G.S.X.
0.3545.10.92Contig216_x_atContig216--5e+0At5g4004060S acidic ribosomal protein P2 (RPP2E)O.I.H.G.S.X.
0.3342.60.82Contig19728_atContig19728--5e+0At5g37055SEF (SERRATED LEAVES AND EARLY FLOWERING)O.I.H.G.S.X.
0.3342.60.83Contig3149_atContig3149--3e-19At3g48170ALDH10A9O.I.H.G.S.X.
0.3342.60.85Contig20342_atContig20342--2e-10At1g27520glycoside hydrolase family 47 proteinO.I.H.G.S.X.
0.3342.60.86HVSMEa0002C03r2_x_atHVSMEa0002C03r2--6e-1At1g73910ATARP4A (Actin-related proteins 4A)O.I.H.G.S.X.
0.3342.60.90HVSMEn0022B10r2_atHVSMEn0022B10r2--1e+0At1g71970unknown proteinO.I.H.G.S.X.
0.3342.60.90Contig13919_atContig13919--7e-1At5g36940CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)O.I.H.G.S.X.
0.3342.60.86Contig13357_atContig13357--9e-2At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.3240.30.91HVSMEn0011A10f_x_atHVSMEn0011A10f--2e+0At3g47990zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3240.30.91Contig2421_atContig2421--7e-2At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.3240.30.91Contig7935_s_atContig7935--6e-1At5g54070AT-HSFA9O.I.H.G.S.X.
0.3240.30.92Contig11518_atContig11518--5e-9At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3037.00.89Contig7519_atContig7519--1e-13At1g03150GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.3037.00.90Contig8122_atContig8122--4e-2At1g66950PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)O.I.H.G.S.X.
0.2935.50.84Contig17993_atContig17993--7e-1At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.2935.50.88Contig1800_atContig1800--3e-17At2g37040pal1 (Phe ammonia lyase 1)O.I.H.G.S.X.
0.2935.50.89Contig13708_s_atContig13708--4e+0At5g27889unknown proteinO.I.H.G.S.X.
0.2935.50.90Contig4646_atContig4646--1e-8At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.2935.50.90Contig10066_atContig10066UDP-D-glucose epimerase 2-2e-13At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)O.I.H.G.S.X.
0.2935.50.90Contig11916_atContig11916--1e-30At2g41540GPDHC1O.I.H.G.S.X.
0.2935.50.92Contig9372_atContig9372--1e-2At5g42480ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.595.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.595.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.394.6GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM372947genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.294.3GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.194.1GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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