Co-expression analysis

Gene ID Contig11957_at
Gene name
Homology with ArabidopsisSimilar to At3g48280: CYP71A25 (HF=5e-2)
Module size 8 genes
NF 0.68
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.92Contig11957_atContig11957--5e-2At3g48280CYP71A25O.I.H.G.S.X.
0.8694.80.92Contig8468_atContig8468--1e-12At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.7891.20.92HR01A09u_atHR01A09u--2e+0At5g55000FIP2O.I.H.G.S.X.
0.7891.20.92Contig11154_atContig11154--1e-15At5g66210CPK28O.I.H.G.S.X.
0.6784.70.92Contig6325_atContig6325--4e-1At5g25490zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.6380.30.93Contig12027_atContig12027ORG4-2e-3At2g06010ORG4 (OBP3-RESPONSIVE GENE 4)O.I.H.G.S.X.
0.5572.00.94HY02G07u_atHY02G07u--4e+0At2g28420lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.4458.90.92Contig24268_atContig24268--2e+0At5g57345unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.595.1GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.595.1GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.394.6GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.394.6GSM372947genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.294.3GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.194.1GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.39736.2.A1_a_at, orthologous to the query gene, Contig11957_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.0PtpAffx.39736.2.A1_a_atAt3g48280cytochrome P450-1e-3At3g26280CYP71B4O.I.H.G.S.X.
0.7393.6PtpAffx.148676.1.S1_atAt3g48280cytochrome P450 /// cytochrome P450 /// cytochrome P450-1e-4At3g26300CYP71B34O.I.H.G.S.X.
0.4067.0Ptp.4024.2.A1_atAt3g48280hypothetical protein-2e-75At3g22890APS1 (ATP SULFURYLASE 1)O.I.H.G.S.X.
0.3559.7Ptp.6191.1.S1_atAt3g48280hypothetical protein-1e-30At3g10300calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.114927.1.A1_atAt3g48280--2e-1At5g38378-O.I.H.G.S.X.
0.3255.2PtpAffx.25432.1.S1_x_atAt3g48280hypothetical protein-7e+0At4g03505-O.I.H.G.S.X.
0.3052.0PtpAffx.121254.1.A1_atAt3g48280hypothetical protein-6e-21At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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