Co-expression analysis

Gene ID	Contig11957_at
Gene name
Homology with Arabidopsis	Similar to At3g48280: CYP71A25 (HF=5e-2)
Module size	8 genes
NF	0.68
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.92	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.92	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.92	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.92	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.93	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.5	95.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.5	95.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.3	94.6	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.1	94.1	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.39736.2.A1_a_at, orthologous to the query gene, Contig11957_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.39736.2.A1_a_at	At3g48280	cytochrome P450	-	1e-3	At3g26280	CYP71B4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.148676.1.S1_at	At3g48280	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	1e-4	At3g26300	CYP71B34	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4024.2.A1_at	At3g48280	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.6191.1.S1_at	At3g48280	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.114927.1.A1_at	At3g48280	-	-	2e-1	At5g38378	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.25432.1.S1_x_at	At3g48280	hypothetical protein	-	7e+0	At4g03505	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.121254.1.A1_at	At3g48280	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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