Co-expression analysis

Gene ID	Contig11919_at
Gene name
Homology with Arabidopsis	Similar to At3g45275: - (HF=2e+0)
Module size	9 genes
NF	0.43
%ile	59.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.77	Contig11919_at	Contig11919	-	-	2e+0	At3g45275	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.85	Contig4900_at	Contig4900	-	-	3e-12	At1g04760	ATVAMP726	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	Contig9269_s_at	Contig9269	-	-	2e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.85	Contig11704_at	Contig11704	-	-	1e-4	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.83	Contig13545_at	Contig13545	-	-	1e-20	At2g38730	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.83	Contig24710_at	Contig24710	-	-	2e-36	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.85	Contig14376_at	Contig14376	-	-	4e-10	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.85	Contig20289_at	Contig20289	-	-	9e-1	At1g77746	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.83	Contig497_s_at	Contig497	-	-	6e-6	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
18.1	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.7	99.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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