Co-expression analysis

Gene ID Contig11903_at
Gene name
Homology with ArabidopsisSimilar to Atmg01230: - (HF=5e+0)
Module size 6 genes
NF 0.28
%ile 36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig11903_atContig11903--5e+0Atmg01230-O.I.H.G.S.X.
0.6784.70.95Contig10286_atContig10286--9e-5At4g39235unknown proteinO.I.H.G.S.X.
0.3545.10.95Contig5513_atContig5513--2e+0At3g02830ZFN1 (ZINC FINGER PROTEIN 1)O.I.H.G.S.X.
0.2224.20.96HVSMEm0007K04r2_atHVSMEm0007K04r2--1e+0At4g35750Rho-GTPase-activating protein-relatedO.I.H.G.S.X.
0.1615.30.95Contig4750_atContig4750--4e+0At5g15360unknown proteinO.I.H.G.S.X.
0.1210.40.95Contig4763_atContig4763--3e-7At4g39960DNAJ heat shock family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.696.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.396.4GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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