Co-expression analysis

Gene ID	Contig11880_at
Gene name
Homology with Arabidopsis	Similar to At2g03110: RNA binding / nucleic acid binding (HF=2e+0)
Module size	6 genes
NF	0.62
%ile	84.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.95	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.95	Contig8797_at	Contig8797	-	-	1e-2	At4g09080	TOC75-IV	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig622_at	Contig622	-	-	2e+0	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.94	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.94	Contig15782_at	Contig15782	-	-	1e+0	At2g42760	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig15872_at	Contig15872	-	-	1e+0	At4g24410	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.1	99.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
16.4	99.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
4.2	96.3	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.5	95.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.9	93.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.26985.1.S1_at, orthologous to the query gene, Contig11880_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.26985.1.S1_at	At2g03110	-	-	1e-2	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.17221.1.S1_at	At2g03110	-	-	2e+0	At5g12060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.88546.3.S1_at	At2g03110	-	-	2e-1	At1g33811	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	GmaAffx.77958.1.S1_at	At2g03110	-	-	4e+0	At1g76840	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.72081.1.S1_at	At2g03110	-	-	1e-4	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.644.1.S1_at	At2g03110	-	-	4e-60	At2g32980	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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