Co-expression analysis

Gene ID	Contig11853_at
Gene name
Homology with Arabidopsis	Similar to At1g20696: HMGB3 (HIGH MOBILITY GROUP B 3) (HF=2e+0)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.66	Contig11853_at	Contig11853	-	-	2e+0	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.64	Contig11791_at	Contig11791	-	-	4e+0	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.65	Contig6520_at	Contig6520	-	-	2e+0	At3g06090	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.68	HP01B09w_at	HP01B09w	-	-	3e+1	Atmg00920	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.72	Contig21789_at	Contig21789	-	-	3e-1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.66	HV04B19u_at	HV04B19u	-	-	9e-1	At5g55507	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.8	98.9	GSM372943	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.0	98.4	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.3	98.1	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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