Co-expression analysis

Gene ID	Contig11831_at
Gene name
Homology with Arabidopsis	Similar to At5g58710: ROC7 (HF=3e-2)
Module size	7 genes
NF	0.29
%ile	37.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.94	Contig11831_at	Contig11831	-	-	3e-2	At5g58710	ROC7	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig14060_at	Contig14060	-	-	3e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig16590_at	Contig16590	-	-	2e-2	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig15129_at	Contig15129	-	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig194_s_at	Contig194	-	-	4e-48	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig16915_at	Contig16915	-	-	1e+0	At1g33110	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig9559_at	Contig9559	-	-	2e-5	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.9	93.4	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.9	93.4	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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