Co-expression analysis

Gene ID Contig11799_at
Gene name
Homology with ArabidopsisSimilar to At1g16640: transcriptional factor B3 family protein (HF=1e-1)
Module size 36 genes
NF 0.29
%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.40.92Contig11799_atContig11799--1e-1At1g16640transcriptional factor B3 family proteinO.I.H.G.S.X.
0.5369.70.94Contig12886_atContig12886--7e-8At1g71410protein kinase family proteinO.I.H.G.S.X.
0.4863.20.94Contig6456_s_atContig6456--4e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.4458.90.94Contig22949_atContig22949--3e+0At2g43280far-red impaired responsive family protein / FAR1 family proteinO.I.H.G.S.X.
0.4053.10.95rbags22i06_atrbags22i06--1e-3At2g23140binding / ubiquitin-protein ligaseO.I.H.G.S.X.
0.4053.10.93Contig10788_atContig10788--6e-6At5g24760alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.3950.50.93Contig6269_atContig6269--1e+1At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.3849.50.92Contig8159_atContig8159--4e-21At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)O.I.H.G.S.X.
0.3747.90.95Contig19041_atContig19041--5e+0At4g22850-O.I.H.G.S.X.
0.3647.10.95Contig13842_atContig13842--5e+0At2g20515unknown proteinO.I.H.G.S.X.
0.3545.10.97Contig7725_atContig7725--8e-1At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.
0.3240.30.95Contig4469_atContig4469--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.3240.30.93HVSMEb0010F06r2_atHVSMEb0010F06r2--5e+0At5g63220unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig22918_atContig22918--3e-1At2g21140ATPRP2 (PROLINE-RICH PROTEIN 2)O.I.H.G.S.X.
0.2935.50.95Contig7831_atContig7831--6e-23At4g17190FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)O.I.H.G.S.X.
0.2935.50.95HT07O19u_s_atHT07O19u--2e+0At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.2835.50.95Contig6569_atContig6569--1e-56At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.
0.2835.50.94Contig5865_atContig5865--2e+1At5g04267unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig10522_atContig10522--5e+0At5g03270unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig16660_atContig16660--5e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.
0.2630.40.93Contig3417_atContig3417--7e-87At5g2354026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.2630.40.95HVSMEb0012G11r2_s_atHVSMEb0012G11r2--4e+0At1g32540LOL1 (LSD ONE LIKE 1)O.I.H.G.S.X.
0.2528.90.95Contig10441_atContig10441--2e+0At1g43722unknown proteinO.I.H.G.S.X.
0.2427.20.95Contig12257_atContig12257--2e-34At5g51070ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)O.I.H.G.S.X.
0.2326.10.95Contig5295_atContig5295--2e-113At2g27210kelch repeat-containing serine/threonine phosphoesterase family proteinO.I.H.G.S.X.
0.2224.20.95Contig1122_s_atContig1122--1e-22At1g07790HTB1O.I.H.G.S.X.
0.2224.20.95Contig8826_atContig8826--4e+0At3g58830haloacid dehalogenase (HAD) superfamily proteinO.I.H.G.S.X.
0.2224.20.95rbah61h03_x_atrbah61h03--5e-61At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.2122.60.96Contig4853_atContig4853--3e-17At2g39800P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)O.I.H.G.S.X.
0.2021.10.95Contig2046_atContig2046--5e+0At1g60815RALFL7 (RALF-LIKE 7)O.I.H.G.S.X.
0.1818.20.94HVSMEm0003G02r2_atHVSMEm0003G02r2--3e-1At3g57160unknown proteinO.I.H.G.S.X.
0.1818.20.94Contig21217_atContig21217--2e+0At5g64810WRKY51O.I.H.G.S.X.
0.1716.90.93Contig8723_atContig8723--6e-7At2g25430epsin N-terminal homology (ENTH) domain-containing proteinO.I.H.G.S.X.
0.1716.90.95Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.1615.30.95Contig14313_atContig14313--3e+0At5g14690unknown proteinO.I.H.G.S.X.
0.1514.10.94Contig20059_atContig20059--3e-5At2g42990GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.595.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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