Co-expression analysis

Gene ID	Contig11789_at
Gene name
Homology with Arabidopsis	Similar to At3g04620: nucleic acid binding (HF=2e+0)
Module size	8 genes
NF	0.52
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig2110_at	Contig2110	-	-	1e-2	At2g39900	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig11383_at	Contig11383	-	-	2e+0	At4g36560	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.6	95.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.3	94.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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