Co-expression analysis

Gene ID	Contig11751_at
Gene name
Homology with Arabidopsis	Similar to At4g38580: ATFP6 (FARNESYLATED PROTEIN 6) (HF=1e-4)
Module size	14 genes
NF	0.27
%ile	34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.88	Contig11751_at	Contig11751	-	-	1e-4	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.94	Contig10402_at	Contig10402	-	-	2e-1	At3g54780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HV11C23u_s_at	HV11C23u	-	-	1e+0	At5g45920	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig12899_at	Contig12899	-	-	5e-1	At2g18270	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	HVSMEi0003H24r2_s_at	HVSMEi0003H24r2	-	-	1e+1	At3g55490	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig11276_at	Contig11276	-	-	4e-5	At5g58730	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig8485_at	Contig8485	-	-	2e-7	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig2935_s_at	Contig2935	-	-	3e-14	At4g27130	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig5341_at	Contig5341	-	-	8e-4	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	Contig13047_at	Contig13047	-	-	6e-1	At3g01311	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	Contig13883_at	Contig13883	-	-	2e+0	At3g17140	invertase inhibitor-related	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig4281_s_at	Contig4281	-	-	6e+0	At5g55710	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	HVSMEm0018N06r2_at	HVSMEm0018N06r2	-	-	4e+0	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.93	Contig3711_at	Contig3711	-	-	2e-26	At1g79600	ABC1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.4	91.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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