Co-expression analysis

Gene ID Contig11738_at
Gene name
Homology with ArabidopsisSimilar to Atcg00780: - (HF=5e-63)
Module size 6 genes
NF 0.12
%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.85HVSMEh0089A15r2_atHVSMEh0089A15r2--1e+0At3g14670unknown proteinO.I.H.G.S.X.
0.1412.90.87Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.1210.40.85Contig18096_atContig18096--5e+0At3g03150unknown proteinO.I.H.G.S.X. (RESPONSIVE TO DESSICATION 20)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1521.1.S1_at, orthologous to the query gene, Contig11738_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.8Zm.19028.1.S1_atAtcg00780hypothetical protein LOC100192863-4e-2At4g19270unknown proteinO.I.H.G.S.X.
0.5369.1Zm.9088.1.A1_atAtcg00780--1e+0At2g06908unknown proteinO.I.H.G.S.X.
0.4658.4Zm.652.1.S1_atAtcg00780methyl binding domain-2e-1At5g17870PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)O.I.H.G.S.X.
0.3336.0Zm.8383.1.A1_atAtcg00780PCO062666 protein-4e-1At5g47960ATRABA4CO.I.H.G.S.X.
0.147.7ZmAffx.130.1.A1_atAtcg00780--3e+0At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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