Co-expression analysis

Gene ID	Contig11738_at
Gene name
Homology with Arabidopsis	Similar to Atcg00780: - (HF=5e-63)
Module size	6 genes
NF	0.12
%ile	14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.85	Contig11738_at	Contig11738	-	-	5e-63	Atcg00780	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	HVSMEh0089A15r2_at	HVSMEh0089A15r2	-	-	1e+0	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.85	Contig7518_at	Contig7518	-	-	2e+0	At1g64107	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.87	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.85	Contig18096_at	Contig18096	-	-	5e+0	At3g03150	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.85	Contig5974_s_at	Contig5974	-	-	1e+0	At2g33380	RD20 (RESPONSIVE TO DESSICATION 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.8	93.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.128896.1.S1_s_at, orthologous to the query gene, Contig11738_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	TaAffx.128896.1.S1_s_at	Atcg00780	-	-	2e-49	Atcg00780	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.13691.1.A1_at	Atcg00780	-	-	2e+0	At5g62950	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.79737.1.S1_at	Atcg00780	-	-	2e-4	At2g01440	ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.92927.1.A1_at	Atcg00780	-	-	7e+0	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.18710.1.S1_s_at	Atcg00780	-	-	4e-45	At4g17370	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.25251.1.S1_at	Atcg00780	-	-	2e-20	At5g13640	ATPDAT	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6079.1.A1_x_at	Atcg00780	-	-	9e-3	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.22473.1.S1_s_at	Atcg00780	-	-	5e+0	At3g15090	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6049.1.S1_at	Atcg00780	-	-	4e-38	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.28343.1.A1_at	Atcg00780	-	-	1e-3	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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