Co-expression analysis

Gene ID Contig11738_at
Gene name
Homology with ArabidopsisSimilar to Atcg00780: - (HF=5e-63)
Module size 6 genes
NF 0.12
%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.85HVSMEh0089A15r2_atHVSMEh0089A15r2--1e+0At3g14670unknown proteinO.I.H.G.S.X.
0.1412.90.87Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.1210.40.85Contig18096_atContig18096--5e+0At3g03150unknown proteinO.I.H.G.S.X. (RESPONSIVE TO DESSICATION 20)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6512.1.S1_s_at, orthologous to the query gene, Contig11738_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6PtpAffx.27285.1.A1_s_atAtcg00780hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4067.0Ptp.7512.1.S1_s_atAtcg00780hypothetical protein-1e-43Atcg00820-O.I.H.G.S.X.
0.2543.6PtpAffx.30207.1.S1_s_atAtcg00780hypothetical protein-2e-61At3g11730ATFP8O.I.H.G.S.X.
0.2340.5PtpAffx.216450.1.S1_atAtcg00780hypothetical protein-2e-4Atcg00500-O.I.H.G.S.X.
0.1830.8PtpAffx.1980.3.A1_a_atAtcg00780hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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