Co-expression analysis

Gene ID Contig11727_at
Gene name
Homology with ArabidopsisSimilar to At3g08840: D-alanine--D-alanine ligase family (HF=2e-10)
Module size 6 genes
NF 0.14
%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.91Contig11727_atContig11727--2e-10At3g08840D-alanine--D-alanine ligase familyO.I.H.G.S.X.
0.4458.90.92Contig15094_atContig15094--2e+0At2g21727-O.I.H.G.S.X.
0.1615.30.93Contig12159_atContig12159--3e+0At5g51360-O.I.H.G.S.X.
0.1311.60.94Contig17403_atContig17403--2e+0At1g69760unknown proteinO.I.H.G.S.X.
0.1210.40.93Contig15805_atContig15805--2e-3At1g74250DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.032.60.95Contig11279_atContig11279--1e+0At3g01830calmodulin-related protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.699.0GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.498.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.398.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.097.2GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.097.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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