Co-expression analysis

Gene ID	Contig11724_at
Gene name
Homology with Arabidopsis	Similar to At5g13160: PBS1 (avrPphB susceptible 1) (HF=8e-11)
Module size	10 genes
NF	0.12
%ile	14.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	0.90	Contig11724_at	Contig11724	-	-	8e-11	At5g13160	PBS1 (avrPphB susceptible 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig6445_s_at	Contig6445	-	-	1e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig9609_at	Contig9609	-	-	2e-2	At1g05205	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig9629_at	Contig9629	-	-	6e-1	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig15558_at	Contig15558	-	-	1e+0	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.92	Contig22325_at	Contig22325	-	-	1e+0	At5g15290	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.93	Contig3246_s_at	Contig3246	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig6115_at	Contig6115	-	-	9e-6	At5g19430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig18157_at	Contig18157	-	-	1e-8	At4g22720	glycoprotease M22 family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig15482_at	Contig15482	-	-	5e+0	At2g07362	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.0	93.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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