Co-expression analysis

Gene ID Contig11724_at
Gene name
Homology with ArabidopsisSimilar to At5g13160: PBS1 (avrPphB susceptible 1) (HF=8e-11)
Module size 10 genes
NF 0.12
%ile 14.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9095.70.90Contig11724_atContig11724--8e-11At5g13160PBS1 (avrPphB susceptible 1)O.I.H.G.S.X.
0.3138.60.94Contig6445_s_atContig6445--1e-1At2g20920unknown proteinO.I.H.G.S.X.
0.2630.40.94Contig9609_atContig9609--2e-2At1g05205unknown proteinO.I.H.G.S.X.
0.2326.10.95Contig9629_atContig9629--6e-1At4g18620-O.I.H.G.S.X.
0.2122.60.95Contig15558_atContig15558--1e+0At1g12080unknown proteinO.I.H.G.S.X.
0.1210.40.92Contig22325_atContig22325--1e+0At5g15290integral membrane family proteinO.I.H.G.S.X.
0.097.40.93Contig3246_s_atContig3246--3e-4At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.075.80.94Contig6115_atContig6115--9e-6At5g19430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.043.40.93Contig18157_atContig18157--1e-8At4g22720glycoprotease M22 family proteinO.I.H.G.S.X.
0.043.40.94Contig15482_atContig15482--5e+0At2g07362unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage