Co-expression analysis

Gene ID Contig11711_at
Gene name
Homology with ArabidopsisSimilar to At4g13510: AMT1 (HF=1e-4)
Module size 8 genes
NF 0.10
%ile 12.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.86Contig11711_atContig11711--1e-4At4g13510AMT1O.I.H.G.S.X.
0.3545.10.90HS09L05u_atHS09L05u--4e+0At5g45350proline-rich family proteinO.I.H.G.S.X.
0.2935.50.89Contig18811_atContig18811--6e-1At3g06435Expressed proteinO.I.H.G.S.X.
0.1210.40.90Contig4590_atContig4590--6e+0At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.075.80.91Contig4608_atContig4608--3e-9At1g12840DET3 (DE-ETIOLATED 3)O.I.H.G.S.X.
0.075.80.91Contig3898_atContig3898--1e-7At3g13200EMB2769 (EMBRYO DEFECTIVE 2769)O.I.H.G.S.X.
0.064.80.91HV11C23u_s_atHV11C23u--1e+0At5g45920carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsO.I.H.G.S.X.
0.032.60.91Contig20086_s_atContig20086--1e+0At5g57570-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.398.1GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.298.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
5.397.4GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.097.2GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.11141.1.S1_at, orthologous to the query gene, Contig11711_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.8Zm.11141.1.S1_atAt4g13510hypothetical protein LOC100272903-1e-7At1g64780ATAMT1O.I.H.G.S.X.
0.5065.7Zm.1113.1.A1_atAt4g13510--1e+0At3g54340AP3 (APETALA 3)O.I.H.G.S.X.
0.5065.7Zm.1111.1.A1_atAt4g13510--3e+0At1g02640BXL2 (BETA-XYLOSIDASE 2)O.I.H.G.S.X.
0.5065.7Zm.11120.1.A1_atAt4g13510hypothetical protein LOC100273183-2e-2At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.041.5Zm.16174.1.S1_atAt4g13510IDP155 protein-9e-2At1g43970unknown proteinO.I.H.G.S.X.
0.031.1Zm.3669.1.A1_atAt4g13510hypothetical protein LOC100279194-1e-42At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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