Co-expression analysis

Gene ID	Contig11711_at
Gene name
Homology with Arabidopsis	Similar to At4g13510: AMT1 (HF=1e-4)
Module size	8 genes
NF	0.10
%ile	12.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.86	Contig11711_at	Contig11711	-	-	1e-4	At4g13510	AMT1	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.90	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	Contig18811_at	Contig18811	-	-	6e-1	At3g06435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.90	Contig4590_at	Contig4590	-	-	6e+0	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	Contig4608_at	Contig4608	-	-	3e-9	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	Contig3898_at	Contig3898	-	-	1e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	HV11C23u_s_at	HV11C23u	-	-	1e+0	At5g45920	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.91	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
5.3	97.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27312.1.S1_x_at, orthologous to the query gene, Contig11711_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.27312.1.S1_x_at	At4g13510	Ammonium transporter	-	8e-17	At4g13510	AMT1	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.80525.1.A1_at	At4g13510	-	-	5e-1	At3g47430	PEX11B	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.25405.2.S1_a_at	At4g13510	-	-	4e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.21038.1.S1_at	At4g13510	Ammonium transporter	-	4e+0	At3g48205	-	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.3910.1.A1_at	At4g13510	-	-	3e+0	At4g33710	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.429.1.S1_at	At4g13510	-	-	2e-1	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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