Co-expression analysis

Gene ID	Contig11709_at
Gene name
Homology with Arabidopsis	Similar to At1g22360: AtUGT85A2 (UDP-glucosyl transferase 85A2) (HF=3e-3)
Module size	6 genes
NF	0.52
%ile	72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.94	Contig11709_at	Contig11709	-	-	3e-3	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig4470_s_at	Contig4470	-	-	3e-1	At1g12240	ATBETAFRUCT4	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig7515_at	Contig7515	-	-	8e-9	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.94	Contig16393_at	Contig16393	-	-	2e-10	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig10961_at	Contig10961	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig5629_at	Contig5629	-	-	1e-3	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.6	92.3	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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