Co-expression analysis

Gene ID Contig11705_at
Gene name
Homology with ArabidopsisSimilar to At2g07050: CAS1 (cycloartenol synthase 1) (HF=3e-29)
Module size 6 genes
NF 0.12
%ile 15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.91Contig11705_atContig11705--3e-29At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.3647.10.92Contig10126_atContig10126--9e-2At4g30067LCR63 (Low-molecular-weight cysteine-rich 63)O.I.H.G.S.X.
0.3342.60.91Contig12388_atContig12388--2e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.1412.90.92Contig7548_atContig7548--5e-35At2g19830SNF7.2O.I.H.G.S.X.
0.1311.60.91Contig12389_s_atContig12389--1e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.032.60.92HS04E01u_s_atHS04E01u--1e+0At1g17970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.697.7GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.097.2GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5697.2.S1_at, orthologous to the query gene, Contig11705_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.8Zm.5697.2.S1_atAt2g07050--5e-25At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.4455.7Zm.1506.1.A1_atAt2g07050defence-related protein-1e-1At3g04720PR4 (PATHOGENESIS-RELATED 4)O.I.H.G.S.X.
0.4048.5Zm.17878.1.S1_atAt2g07050--1e-3At1g28060small nuclear ribonucleoprotein family protein / snRNP family proteinO.I.H.G.S.X.
0.2318.6Zm.9567.1.S1_atAt2g07050--5e-10At5g10780-O.I.H.G.S.X.
0.1710.6Zm.17961.1.A1_atAt2g07050--1e-4At1g79050DNA repair protein recAO.I.H.G.S.X.
0.136.8Zm.1297.1.S1_atAt2g07050hypothetical protein LOC100276762-1e+0At1g23670unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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