Co-expression analysis

Gene ID	Contig11680_at
Gene name
Homology with Arabidopsis	Similar to At1g74660: MIF1 (MINI ZINC FINGER 1) (HF=2e-3)
Module size	6 genes
NF	0.55
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig11680_at	Contig11680	-	-	2e-3	At1g74660	MIF1 (MINI ZINC FINGER 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig16009_at	Contig16009	-	-	4e+0	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig13528_at	Contig13528	-	-	9e-9	At1g29690	CAD1 (constitutively activated cell death 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig9559_at	Contig9559	-	-	2e-5	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig11648_at	Contig11648	-	-	5e-13	At5g04360	ATLDA (LIMIT DEXTRINASE)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig10690_at	Contig10690	-	-	2e-5	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.6	92.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.4	91.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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