Co-expression analysis

Gene ID	Contig1167_s_at
Gene name
Homology with Arabidopsis	Similar to At3g09480: histone H2B, putative (HF=5e-9)
Module size	22 genes
NF	0.28
%ile	36.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.94	Contig1167_s_at	Contig1167	-	-	5e-9	At3g09480	histone H2B, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig26263_at	Contig26263	-	-	4e+0	At5g54350	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	HVSMEi0006K11r2_s_at	HVSMEi0006K11r2	-	-	6e-2	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig7622_at	Contig7622	-	-	2e-7	At3g18380	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.97	Contig2830_at	Contig2830	-	-	2e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig13468_at	Contig13468	-	-	2e+0	At2g33850	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig17383_at	Contig17383	-	-	3e-1	At5g54340	zinc finger (C2H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig10745_at	Contig10745	-	-	5e-1	At5g43380	TOPP6	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig5115_at	Contig5115	-	-	3e-6	At2g32600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig13164_at	Contig13164	-	-	2e+0	At5g60553	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig3680_s_at	Contig3680	-	-	3e-13	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
7.4	98.5	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.0	93.8	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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