Co-expression analysis

Gene ID	Contig11674_at
Gene name
Homology with Arabidopsis	Similar to At5g49420: MADS-box protein (AGL84) (HF=3e-1)
Module size	6 genes
NF	0.57
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.96	Contig11674_at	Contig11674	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig16251_at	Contig16251	-	-	2e-2	At1g74140	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig18946_at	Contig18946	-	-	1e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.0	97.2	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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