Co-expression analysis

Gene ID	Contig11649_at
Gene name
Homology with Arabidopsis	Similar to At1g21840: UREF (urease accessory protein F) (HF=1e-1)
Module size	6 genes
NF	0.79
%ile	96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.89	Contig11649_at	Contig11649	-	-	1e-1	At1g21840	UREF (urease accessory protein F)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.88	Contig12714_at	Contig12714	-	-	2e-7	At3g55030	PGPS2 (phosphatidylglycerolphosphate synthase 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	Contig2843_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	Contig5282_at	Contig5282	-	-	1e-11	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.89	Contig19331_at	Contig19331	-	-	3e+0	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.86	Contig6688_s_at	Contig6688	-	-	1e-8	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.1	99.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.0	99.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
8.2	98.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
7.6	98.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage