Co-expression analysis

Gene ID	Contig11602_at
Gene name
Homology with Arabidopsis	Similar to At3g21800: UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8) (HF=7e-2)
Module size	8 genes
NF	0.70
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.86	Contig11602_at	Contig11602	-	-	7e-2	At3g21800	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.89	Contig9052_at	Contig9052	-	-	1e-4	At1g08470	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.87	HC02E04_T3_at	HC02E04_T3	-	-	8e+0	At1g63060	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.88	Contig7356_at	Contig7356	-	-	8e-69	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.88	Contig11327_at	Contig11327	-	-	3e+1	At5g11140	-	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.86	Contig9050_at	Contig9050	-	-	8e-6	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.88	Contig24332_at	Contig24332	-	-	6e-5	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.88	Contig20457_at	Contig20457	-	-	5e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.9	93.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.8	93.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.8	93.1	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.8	93.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage